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Revert "[AN-304] Bioconductor 3.20.0 image update" (#4812)
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automation/src/test/resources/reference.conf

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@@ -7,7 +7,7 @@ leonardo {
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baseImageUrl = "us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:1.1.3"
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gcrWelderUri = "us.gcr.io/broad-dsp-gcr-public/welder-server"
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dockerHubWelderUri = "broadinstitute/welder-server"
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rstudioBioconductorImageUrl = "us.gcr.io/broad-dsp-gcr-public/anvil-rstudio-bioconductor:3.20.0"
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rstudioBioconductorImageUrl = "us.gcr.io/broad-dsp-gcr-public/anvil-rstudio-bioconductor:3.19.0"
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//each fiab will have a unique topic name sourced from leonardo.conf, this is never published to in automation tests to ensure pub/sub components can auth properly, but never read from to avoid conflicts.
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topicName = "leonardo-pubsub-test"
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location = "us-central1-a"

http/src/main/resources/reference.conf

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@@ -70,7 +70,7 @@ dataproc {
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}
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# Cached dataproc image used by Terra
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customDataprocImage = "projects/broad-dsp-gcr-public/global/images/leo-dataproc-image-2-1-11-debian11-2024-12-06-04-19-37"
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customDataprocImage = "projects/broad-dsp-gcr-public/global/images/leo-dataproc-image-2-1-11-debian11-2024-12-11-20-54-48"
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# The ratio of memory allocated to spark. 0.8 = 80%.
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# Hail/Spark users generally allocate 80% of the ram to the JVM.
@@ -111,7 +111,7 @@ dataproc {
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}
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gce {
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customGceImage = "projects/broad-dsp-gcr-public/global/images/leo-gce-image-2024-12-06-03-09-27"
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customGceImage = "projects/broad-dsp-gcr-public/global/images/leo-gce-image-2024-12-11-20-55-03"
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userDiskDeviceName = "user-disk"
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defaultScopes = [
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"https://www.googleapis.com/auth/userinfo.email",

jenkins/dataproc-custom-images/prepare-custom-leonardo-jupyter-dataproc-image.sh

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@@ -24,7 +24,7 @@ terra_jupyter_gatk="us.gcr.io/broad-dsp-gcr-public/terra-jupyter-gatk:2.3.8"
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terra_jupyter_aou="us.gcr.io/broad-dsp-gcr-public/terra-jupyter-aou:2.2.14"
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welder_server="us.gcr.io/broad-dsp-gcr-public/welder-server:8667bfe"
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openidc_proxy="broadinstitute/openidc-proxy:2.3.1_2"
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anvil_rstudio_bioconductor="us.gcr.io/broad-dsp-gcr-public/anvil-rstudio-bioconductor:3.20.0"
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anvil_rstudio_bioconductor="us.gcr.io/broad-dsp-gcr-public/anvil-rstudio-bioconductor:3.19.0"
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# Note that this is the version used currently by AOU in production, the one above can be staged for testing
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terra_jupyter_aou_old="us.gcr.io/broad-dsp-gcr-public/terra-jupyter-aou:2.2.13"

jenkins/gce-custom-images/prepare_gce_image.sh

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@@ -23,7 +23,7 @@ terra_jupyter_gatk="us.gcr.io/broad-dsp-gcr-public/terra-jupyter-gatk:2.3.8"
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terra_jupyter_aou="us.gcr.io/broad-dsp-gcr-public/terra-jupyter-aou:2.2.14"
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welder_server="us.gcr.io/broad-dsp-gcr-public/welder-server:8667bfe"
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openidc_proxy="broadinstitute/openidc-proxy:2.3.1_2"
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anvil_rstudio_bioconductor="us.gcr.io/broad-dsp-gcr-public/anvil-rstudio-bioconductor:3.20.0"
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anvil_rstudio_bioconductor="us.gcr.io/broad-dsp-gcr-public/anvil-rstudio-bioconductor:3.19.0"
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# Note that this is the version used currently by AOU in production, the one above can be staged for testing
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terra_jupyter_aou_old="us.gcr.io/broad-dsp-gcr-public/terra-jupyter-aou:2.2.13"

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