v19.04.02 (2019-04-14)
Fixed bugs:
- ECMM fails for IJ 1.52n #309
v19.04.01 (2019-04-09)
Implemented enhancements:
- Add simple Omero integration #307
Fixed bugs:
v19.03.01 (2019-03-26)
Implemented enhancements:
Fixed bugs:
- QCONF plugins return with error if cancelled #304
- Wrong behaviour of FormatConverter if there is no stat file #302
- Format converter creates ECMM data even if ECMM was not run #301
- Mask loaded to Random Walk plugin fails under Windows #293
v19.01.01 (2019-01-16)
v18.10.01 (2018-10-17)
Fixed bugs:
- Macro string processor fails on Windows #299
v18.02.01 (2018-02-26)
Implemented enhancements:
- ECMM should be run from macro #296
- Update QAnalysis to be run from Macro #298
- Update ANA to be run form Macro #297
- Binary segmentation must fill Stats #295
- Add new module for binary segmentation #292
- Update description for Generate Mask window #288
Fixed bugs:
- Update names of plugins returned to Macro Recorder #294
- Filter selectors do not refresh #291
- Filter does not update after manual edit #285
v18.01.01 (2018-01-23)
Implemented enhancements:
- Add Median plugin to BOA #196
- Add extra filtering when propagating masks #286
- Multi cell segmentation in RW #284
- Add save button in BOA #280
- Improve support of IJ macro language #273
- Add non-proportional scaling #239
Fixed bugs:
- BOA saving fails when there is ROI in BOA window #279
v17.12.02 (2017-12-10)
Implemented enhancements:
- Add freeze cell button in BOA #277
Fixed bugs:
- Fix problem with JSpinners and 4 fractional places only #278
- BOA reports wrong frame number on error #271
v17.12.01 (2017-12-08)
Implemented enhancements:
- Freeze cells to skip resegmenting #274
Fixed bugs:
- Allow to set relative error in RW #275
v17.10.02 (2017-10-21)
Implemented enhancements:
Fixed bugs:
- Errors when user cancelled registration window #270
v17.10.01 (2017-10-13)
Implemented enhancements:
Fixed bugs:
- Add UI to FormatConverter #145
v17.07.02 (2017-08-01)
Fixed bugs:
- Re-apply filter breaks stats #268
v17.07.01 (2017-07-28)
Implemented enhancements:
- Fix polar plots #264
- Optimise stat saving #262
- Add invert option to DIC #261
- Add copy from previous option #259
- Snakes created from binary masks do not have properties set #256
Fixed bugs:
- Add conversion for STATS #175
v17.06.02 (2017-06-16)
Implemented enhancements:
Fixed bugs:
- Save & Quit fails if only one frame is segmented #255
- Store BOA filter config in QCONF #254
- Hamcrest is obsolete #253
v17.06.01 (2017-06-05)
Implemented enhancements:
v17.05.01 (2017-05-24)
Fixed bugs:
- SVG circles are not plotted #251
- Field 'frozen' is not included in copy constructor #250
- HatSnakeFilter throws exception if there is no input image #249
- CorrectDensity can finish before processing all nodes #248
- TrackOutline - first and last points are the same #247
- Fix running mean filter in OutlineProcessor #246
v17.04.04 (2017-04-28)
Implemented enhancements:
Fixed bugs:
v17.04.03 (2017-04-11)
Implemented enhancements:
- Add stopping criterion based on RelError #238
- Hat filter should filter all protrusions above acceptance level #236
Fixed bugs:
- Lack of file separator #237
v17.04.02 (2017-04-03)
Fixed bugs:
- On paQP->QCONF conversion last frame of BOA parameters has default values #235
v17.04.01 (2017-03-31)
Implemented enhancements:
- Rework getQuimPBuildInfo #84
- Button Load in BOA should work with QCONF #232
- Copy plugin to all frames #184
Fixed bugs:
- Closing RW window causes IJ to end #234
- Update scale interval and image scale on QCONF load #233
- FormatConverter loses scale in paQP #146
v17.03.02 (2017-03-22)
Implemented enhancements:
- Add error criterion to Random Walker segmentation #113
- Add option for segmenting current frame only #230
- Improve detection of vesicles #229
- Add saving in old format as configurable option #228
Fixed bugs:
- Accidental bug when sliding over slices #197
BioinformaticsV (2017-03-17)
v17.03.01 (2017-03-14)
Implemented enhancements:
Fixed bugs:
Bioinformatics (2017-03-13)
v17.02.04 (2017-02-16)
Implemented enhancements:
- ANA results should be displayed in IJ table #225
Fixed bugs:
- When trying to use "Add cell" errors are produced #222
- Frame unzoom does not work on windows #193
- QCONF keeps absolute paths #118
v17.02.03 (2017-02-07)
Fixed bugs:
- Contour shrinking behaviour in ANA #224
v17.02.02 (2017-02-06)
Fixed bugs:
Merged pull requests:
v17.02.01 (2017-01-30)
Implemented enhancements:
- Add option for real-time updating segmentation #213
- Add scijava pom as parent pom #212
- Use threads for RW #208
- Add smart shrinking #205
- Change webpage in quimp info #204
- Add convert masks plugin to plugin menu #198
- Suppress standard console messages #188
- Plugin for rendering masks from QCONF #183
- Clone copies the whole stack - user should be notified that he must provide stack of seed #179
- Modules produce paQP files if new format selected #173
- ANA throws unnecessary exception if no file opened #172
- Add perpendicular averaging for DIC #170
- Replace log4j #168
- Add warning before use of Formatconverter #166
- Add showing registration window option to Bar #165
- Licence info #160
- Add registration window #159
- Add result preview #156
- Add more advanced UI to Protrusion tracking #152
- Add conversion for ANA and Stats to FormatConverter #151
- Add statistics for Protrusion Analysis #150
- Add polar plots #148
- Plot color outlines according to motility or other parameters around cell #147
- Add separate tool to convert paQP to QCONF #144
- Static maxima and tracks can be displayed on mean image #142
- Add plotting outlines in colors depending on given criteria #141
- Add preselection of active file format #137
- Rename toolbar menu entry #136
- Add description of parameters in paQP #134
- Option for saving outlines as separte image #127
- Adapt ANA to new file format #126
- User friendly message when input image in wrong format #125
- QCONF should be generated always together with old format #124
- Detect if loaded QCONF to ECMM contains any previous data #123
- Add support of QCONF in Q Analysis #122
- Add options to clear all snakes and other settings #117
- Random Walk GUI should offer option of creating of seed image #111
- Add link to doc from QuimP bar #110
- Add default log4j configuration file #107
- Add about menu in QuimP bar #103
- Fake segmentation should use various sources of masks #102
- Add creating Snakes directly from masks #98
- Implement RandomWalk method as separate filter for QuimP #97
- Add color marker for filter list to indicate whether they have been instanced #92
- Detect if user loaded correct file for Plugin config and Global config #91
- Original Snakes are not restored #90
- Add date to QCONF #89
- Allow to load new format in BOA #87
- Switch to new output format in ECMM #83
- Check SnakePluginList for possible bug #82
- Add fixed-width fonts in About dialog #78
- Set show head to off by default #76
- Separate BOAp and SegParam classes #69
- Save and restore current BOA state #64
- Selecting head node in ECMM #61
- Rework QuimP bar #60
- Rename Finish to Quit & Save #59
- Discard/Apply filter effects for whole stack without segmenting again #58
- Add Cancel button in QWindow template #55
- About window displays short description of filters #54
- Let About window supports RMB #53
- Fix support for plugins interfaces #48
- Add option for displaying node in QuimP view #47
- Option for temporary disabling plugins #43
- Add history of actions #42
- Add plugin configration saving #41
- Add DIC to icon #40
- Create results as new images #38
- DIC plugin does not report progress #37
- Option to show plots of segmented and processed snake #35
- Add About button #33
- Implement bidirectional communication between BOA and plugin #31
- Load plugin jars from disk on BOA run #28
- Implement BOA plugin interface #26
- Implement simple window builder #25
- Integrate DIC filtering into QuimP #23
- Review comments for DIC #21
- Rework DIC to store precomputed values #19
- Fix reference point over time #18
- Generalize rotation #14
- Move bounding box to separate class #13
- Optimize DIC for normal cpu #12
- Add rotation without clipping #11
- Implement DIC based on matrix #10
Fixed bugs:
- Fix TrackVisualisationTest #215
- Registration window is not displayed correctly #211
- Prevent crashing when less than 3 nodes #209
- Possibe bug in correct density #207
- Exception thrown when slices seeds and show seeds are used #203
- Hide exception #202
- Double extensions #201
- Zoom selector does not update #199
- Zoom does not work in all cases #192
- BOA adds snake but not display it #191
- Error when processing 2 cells in protrusion analysis module #190
- Wrong message after loading file #185
- DIC failed on 90 deg #182
- DIC does not process stacks #178
- QCONF and paQP side-saved on new file format path contains wrong fluoro datafiles #174
- ECMM batch processing modifies wrong file. #171
- Show license does not work #167
- Update registration text #164
- BOA fails if old plugins are available #163
- Remove all white characters before key generation #161
- Random Walk reports wrong colors #158
- ECMM and ANA fails on Format conversion #157
- Protrusion Analysis does not work on standard Fiji instalation #154
- Ana adds some strange paths to paQP #132
- Add protection against lack of image. #131
- Clear stored measurements does not work #130
- paQP file may contain bad segmentation parameters #128
- BOA does not ask about file to save on SaveQuit #116
- Current frame sometimes does not update when action taken in Binary Segmentation plugin #115
- Binary Segmentation causes errors when snake is modified #114
- FakeSegmentation fails on single slice images #112
- Edited snakes are not processed by filters #109
- Plugin names do not appear on list #106
- Restoring QCONF on BOA in ImageJ causes error #105
- Loading QCONF causes massive exceptions sometimes #104
- "Open Image" in QuimP bar does not work #101
- Fake segmentation window can be duplicated #100
- Outline is not refreshing after loading QCONF #95
- When global config is loaded opened plugins are not closed #94
- Store does not work when full range segmentation #93
- QuimP plugins appear in ImageJ plugin menu #77
- Unpredictable zoom #75
- log4j config not found #73
- Fix formatting in About #71
- When frame is edited and there is plugin activated on earlier frame this plugin extends to edited frame #68
- BOA fails if quitted after start #65
- ECMM fails on run #62
- Logs in main window does not scroll and numbering is wrong on second BOA run #57
- Make list of filters more intuitive #56
- ECMM does not keep Node 0 #52
- Plugin window does not disapear when BOA finishes #51
- Rename menu Plot processed to Plot original #44
- Deleting cells is unpredictable #34
- Wrong behaviour window when selecting plugin to none #32
- Snake should not be created on plugin error #27
- plugin.conf and icons not included in QuimP.jar #22
- Wrong reconstruciotn on image edges #16
- Possible wrong rotation #15
- Ana plugin fails when image is created in IJ #8
- BOA crashes when two-channel image opened #7
- BOA displays message BOA running on next run #5
- Active ROI tool changes to line after cell deletion #4
- Wrong composition of BOA window #3
Merged pull requests:
* This Change Log was automatically generated by github_changelog_generator