test.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "d:\\CodeField\\Codefile\\srp\\lib\\site-packages\\tqdm\\auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\n",
      "  from .autonotebook import tqdm as notebook_tqdm\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "' \\n    About model param\\n    you can see https://huggingface.co/docs/transformers/main/en/model_doc/bert#transformers.BertModel.forward\\n    author: Well, I think it is no need to understand each params in this function. Because the model we use is \\n    trained by others.The only thing we ought to do is understanding the attribute of the output of the function.\\n\\n    About the return\\n    author: According to the official web page. The function will return \\n    \"transformers.modeling_outputs.BaseModelOutputWithPoolingAndCrossAttentions\" or \"tuple(torch.FloatTensor)\"\\n    which is comprised various elements depending on the configuration (BertConfig) and inputs.\\n\\n        output property list\\n        1. last_hidden_state(torch.FloatTensor of shape (batch_size, sequence_length, hidden_size))\\n            Sequence of hidden-states at the output of the last layer of the model.\\n        2. pooler_output(torch.FloatTensor of shape (batch_size, hidden_size))\\n            hidden-state of the first token of the sequence (classification token) after further processing \\n            through the layers used for the auxiliary pretraining task.\\n            author: [CLS] word_vector\\n        3. hidden_states (tuple(torch.FloatTensor)\\n            🔺 it is optional. returned when output_hidden_states=True is passed or when \\n            config.output_hidden_states=True)\\n            Tuple of torch.FloatTensor (one for the output of the embeddings, if the model has an embedding \\n            layer, + one for the output of each layer) of shape (batch_size, sequence_length, hidden_size)\\n        4. attentions(tuple(torch.FloatTensor)\\n            🔺 it is optional. returned when output_attentions=True is passed or when \\n            config.output_attentions=True)\\n            Attentions weights after the attention softmax, used to compute the weighted average in the \\n            self-attention heads.\\n        5. cross_attentions (tuple(torch.FloatTensor)\\n            🔺 it is optional.returned when output_attentions=True and config.add_cross_attention=True is \\n            passed or when config.output_attentions=True)\\n            Attentions weights of the decoder\\'s cross-attention layer, after the attention softmax, used to \\n            compute the weighted average in the cross-attention heads.\\n        6. past_key_values (tuple(tuple(torch.FloatTensor))\\n            🔺 it is optional.returned when ...\\n            Contains pre-computed hidden-states(both optional. When...) that can be used (see past_key_values \\n            input) to speed up sequential decoding.\\n'"
      ]
     },
     "execution_count": 1,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "'''\n",
    "About this you can see more information in the website: https://huggingface.co/docs/transformers/main/en/model_doc/bert#transformers.BertModel\n",
    "'''\n",
    "from transformers import AutoTokenizer, AutoModel\n",
    "import torch\n",
    "\n",
    "tokenizer = AutoTokenizer.from_pretrained(\"dmis-lab/biobert-v1.1\")\n",
    "\n",
    "# return transformers.modeling_outputs.BaseModelOutputWithPoolingAndCrossAttentions\n",
    "model = AutoModel.from_pretrained(\"dmis-lab/biobert-v1.1\")\n",
    "\n",
    "''' \n",
    "    About model param\n",
    "    you can see https://huggingface.co/docs/transformers/main/en/model_doc/bert#transformers.BertModel.forward\n",
    "    author: Well, I think it is no need to understand each params in this function. Because the model we use is \n",
    "    trained by others.The only thing we ought to do is understanding the attribute of the output of the function.\n",
    "\n",
    "    About the return\n",
    "    author: According to the official web page. The function will return \n",
    "    \"transformers.modeling_outputs.BaseModelOutputWithPoolingAndCrossAttentions\" or \"tuple(torch.FloatTensor)\"\n",
    "    which is comprised various elements depending on the configuration (BertConfig) and inputs.\n",
    "\n",
    "        output property list\n",
    "        1. last_hidden_state(torch.FloatTensor of shape (batch_size, sequence_length, hidden_size))\n",
    "            Sequence of hidden-states at the output of the last layer of the model.\n",
    "        2. pooler_output(torch.FloatTensor of shape (batch_size, hidden_size))\n",
    "            hidden-state of the first token of the sequence (classification token) after further processing \n",
    "            through the layers used for the auxiliary pretraining task.\n",
    "            author: [CLS] word_vector\n",
    "        3. hidden_states (tuple(torch.FloatTensor)\n",
    "            🔺 it is optional. returned when output_hidden_states=True is passed or when \n",
    "            config.output_hidden_states=True)\n",
    "            Tuple of torch.FloatTensor (one for the output of the embeddings, if the model has an embedding \n",
    "            layer, + one for the output of each layer) of shape (batch_size, sequence_length, hidden_size)\n",
    "        4. attentions(tuple(torch.FloatTensor)\n",
    "            🔺 it is optional. returned when output_attentions=True is passed or when \n",
    "            config.output_attentions=True)\n",
    "            Attentions weights after the attention softmax, used to compute the weighted average in the \n",
    "            self-attention heads.\n",
    "        5. cross_attentions (tuple(torch.FloatTensor)\n",
    "            🔺 it is optional.returned when output_attentions=True and config.add_cross_attention=True is \n",
    "            passed or when config.output_attentions=True)\n",
    "            Attentions weights of the decoder's cross-attention layer, after the attention softmax, used to \n",
    "            compute the weighted average in the cross-attention heads.\n",
    "        6. past_key_values (tuple(tuple(torch.FloatTensor))\n",
    "            🔺 it is optional.returned when ...\n",
    "            Contains pre-computed hidden-states(both optional. When...) that can be used (see past_key_values \n",
    "            input) to speed up sequential decoding.\n",
    "'''"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "import json"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "# read json(test)\n",
    "with open(\"./ner_output/entities.json\",\"r\") as f:\n",
    "    data = json.load(f)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "{\n",
      "    \"Hepatitis B Virus Infection\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"hepatitis B virus infection\"\n",
      "        ]\n",
      "    },\n",
      "    \"Hepatitis B\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"hepatitis B\",\n",
      "            \"hepatitis b\"\n",
      "        ]\n",
      "    },\n",
      "    \"HBV infection\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"HBV Infection\"\n",
      "        ]\n",
      "    },\n",
      "    \"end-stage liver disease\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"End-Stage Liver Disease\"\n",
      "        ]\n",
      "    },\n",
      "    \"liver cirrhosis\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Liver cirrhosis\"\n",
      "        ]\n",
      "    },\n",
      "    \"hepatocellular carcinoma\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Hepatocellular Carcinoma\"\n",
      "        ]\n",
      "    },\n",
      "    \"HCC\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Hepatitis\"\n",
      "        ]\n",
      "    },\n",
      "    \"serum hepatitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"\\u201cAustralian antigen\\u201d\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"he\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"He\"\n",
      "        ]\n",
      "    },\n",
      "    \"patitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Australian antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBV surface antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBsAg\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"n\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"uc\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"leo\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"HBV immuno-globulins\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBsAg gene\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBsAg protein\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"anti-HBs\": {\n",
      "        \"type\": \"genetic\",\n",
      "        \"alias\": [\n",
      "            \"Anti-HBs\"\n",
      "        ]\n",
      "    },\n",
      "    \"HBeAg\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"anti-HBe\": {\n",
      "        \"type\": \"genetic\",\n",
      "        \"alias\": [\n",
      "            \"Anti-HBe\"\n",
      "        ]\n",
      "    },\n",
      "    \"anti-HBc\": {\n",
      "        \"type\": \"genetic\",\n",
      "        \"alias\": [\n",
      "            \"Anti-HBc\"\n",
      "        ]\n",
      "    },\n",
      "    \"interferon-\\u03b1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"lamivudine\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"nucleos(t)ide\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"anti-HBV\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"pegylated IFN\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"Peg-IFN\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"entecavir\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ETV\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"tenofovir disoproxil fumarate\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"TDF\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"hepatic inflammation\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"viral infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infected with HBV\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver disease\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Liver Disease\"\n",
      "        ]\n",
      "    },\n",
      "    \"chronic hepatitis B\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"CHB\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBV- infected\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"inflammation\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"fi\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"brosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ALT\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBV-infected\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver injury\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"cirrhosisis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"cirrhosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"c\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"C\"\n",
      "        ]\n",
      "    },\n",
      "    \"irrhot\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"irrhotic\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"death\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"envelopeproteins\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"core\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PreS1 promoter\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PreS2/S promoter\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"X promoter\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"EnhI\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"EnhII\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"5 kb PreC/C mRNA\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"4 kb PreS1 mRNA\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PreS2/S\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"7 kb X mRNA\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PreC/C ORF\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBcAg\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"P ORF\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBV DNA polymerase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PreS/S ORF\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"X ORF\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"X protein\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBx\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"rcDNA\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"sodium\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"L protein\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"sodium-taurocholatecotransporting polypeptide\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"NTCP\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"host RNA polymerase II\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"DNA polymerase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"pgRNA\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"pgRNA-polymerase ribonucleoprotein\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"RNP\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"core antigen polypeptide dimer\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"envelope protein\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HSPG\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBV promoter\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBV genomic enhancer I\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"EnhI/Xp\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"enhancer II\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"EnhII/Cp\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBV EnhI\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"X\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"SP\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Xp\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"C/EBP\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"P53\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IRF\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"NF1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HNF3\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HNF4\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"RXR\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PPAR\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"COUPTF\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"RFX1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"AP1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"CREB\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ATF2\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Cp\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"SP1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"FTF\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HLF\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"E4BP4\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"COUPTF1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ARP1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"patom\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"a\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"A\"\n",
      "        ]\n",
      "    },\n",
      "    \"FXR\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"LRH1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PGC1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"CBP\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"SRC1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PRMT1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"SBP\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"APOBEC3B\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PRMT5\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PRKAA\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"AMPK\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"viral protein HBx\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"calcium\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"Pyk2\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"FAK\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"SMC5/6\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"liver inflammation\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"re\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"tinoic acid\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"Toll-like receptors\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"retinoic acid receptors\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"im\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"munity\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"IFN\\u03b1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IFN-\\u03b1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Major histo-compatibility complex (MHC) class I\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IFN-\\u03b3\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IF\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IFN-\\u03b1-2a\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IFN-\\u03b1-2b\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IFN-\\u03b1-1b\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"irrhosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"IFN\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Peg\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"P\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"p\"\n",
      "        ]\n",
      "    },\n",
      "    \"Peg-IFN-\\u03b1-2a\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Peg-IFN-\\u03b1-2b\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"LAM\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"liver diseases\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Liver Diseases\"\n",
      "        ]\n",
      "    },\n",
      "    \"adefovir dipivoxil\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ADV\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ne\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"phrotoxicity\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"AD\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"ad\"\n",
      "        ]\n",
      "    },\n",
      "    \"Telbivudine\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"telbivudine\"\n",
      "        ]\n",
      "    },\n",
      "    \"LdT\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"nucleoside\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"T\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"t\"\n",
      "        ]\n",
      "    },\n",
      "    \"fibrosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Tenofovir alafenamide\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"tenofovir alafenamide\"\n",
      "        ]\n",
      "    },\n",
      "    \"TAF\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"bone and renal abnormalities\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Peg- IFN\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"Peg-IFN (2\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Peg-IF\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ET\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"Peg-IFN-\\u03b12a\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBV polymerase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ribonuclease H\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"RNaseH\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"retinoic acid\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"nucleotide\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"TLR-7\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"TLR-8\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"retinoic acid-inducible gene 1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"RIG-1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"nucleotide-binding oligomerization domain protein 2\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"NOD-2\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"programmed death receptor 1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PD-1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"NTCP receptor\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"TALENs\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Cas9\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"CRIS\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Cas\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"viral anti-gen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ARC-520\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"NVR 3\\u2013778\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"JNJ-6379\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"GLS4\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ABI-H0731\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"Besifovir\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"LB80380\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"BSV\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ucleotide\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"CMX157\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"REP2139\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"REP2165\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"CH\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Ch\"\n",
      "        ]\n",
      "    },\n",
      "    \"Toll-like receptor 7\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"programmed cell death-1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"anti-PD-1 antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"esophageal varices\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"yrosine\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"sorafenib\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"Sorafenib\"\n",
      "        ]\n",
      "    },\n",
      "    \"le\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"nvatinib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"tyrosine kinase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"atezo 1 bev\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"tyrosine\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"cab\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ozantinib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"gorafenib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"a-fetoprotein\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ni\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"following\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"len\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"vatinib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"nivolumab\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"Nivolumab\"\n",
      "        ]\n",
      "    },\n",
      "    \"gastrointestinal-cancer\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatocellularcarcinoma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver cancer\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Liver Cancer\"\n",
      "        ]\n",
      "    },\n",
      "    \"cancer\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Cancer\"\n",
      "        ]\n",
      "    },\n",
      "    \"viral hepatitis\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Viral hepatitis\"\n",
      "        ]\n",
      "    },\n",
      "    \"hepatitis B virus [HBV] infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepati-tis C virus [HCV] infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"alcohol\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"\\ufb02atoxin\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"obesity\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"diabetes\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Diabetes\"\n",
      "        ]\n",
      "    },\n",
      "    \"type II diabetes\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"sor-afenib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"sor- afenib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"e\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"E\"\n",
      "        ]\n",
      "    },\n",
      "    \"\\ufb01\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ca\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"he- patocellular carcinoma, including patients who are no longer candidates for surgical or liver-directed thera- pies (ie, patients with characteristics such as multifocal and/or in\\ufb01ltrative disease within the liver, vascularin\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"toxicity\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"and\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"cabozantinib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"AFP\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"injury\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"so\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"r- afenib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"nvat\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"Sorafen\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"sorafen\"\n",
      "        ]\n",
      "    },\n",
      "    \"OS\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hand-foot skin reaction\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"H\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"h\"\n",
      "        ]\n",
      "    },\n",
      "    \"FSR\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"di\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"arrhea\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"alopecia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"fatigue\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"r\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"R\"\n",
      "        ]\n",
      "    },\n",
      "    \"ash\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"desquamation\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ypertension\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anorexia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Lenvatinib\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"lenvatinib\"\n",
      "        ]\n",
      "    },\n",
      "    \"versus\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"the\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"al\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"AL\"\n",
      "        ]\n",
      "    },\n",
      "    \"opecia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"te\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"inuria\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"d\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ysphonia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"y\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"pothyroidism\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"varices\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"atezo 1 be\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"FS\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"diarrhea\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"bilirubin\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"atezo 1\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"volumab\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"gor\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"steatohepatitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"BC\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Reg\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"orafenib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"s\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"teatohepatitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"extrahepatic lesion\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"intrahepatic lesion\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"for\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"regorafenib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"deaths\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"with\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ab\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"cabo-zantinib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"met\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ast\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"AST\"\n",
      "        ]\n",
      "    },\n",
      "    \"ases\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hyponatremia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"bi\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"lirubin\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"alanine\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"alanine transaminase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"anemia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"atezo 1bev\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"portal hypertension\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"bleeding\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"variceal bleed\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"myocardial infarction\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"stroke\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"autoimmune disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"toxic\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HCV\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"tumor\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"lenvatinib are recommended where there are con-traindications to atezo 1 be\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"hypertension\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HF\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"or\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"abozantinib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"rafenib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"vo\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"options\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"on\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"antinib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"as\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"AS\"\n",
      "        ]\n",
      "    },\n",
      "    \"cites\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"renal dysfunction\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"i\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"I\"\n",
      "        ]\n",
      "    },\n",
      "    \"pilimu- mab\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ate\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"HCV infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"FGF19\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"FGFR4\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"tumors\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"encephalopathy\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"esophagealvarices\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ascites\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBV or HCV\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infection of the liver\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liverfailure\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"BS\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"bozantinib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"regoraf\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"sora\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ipilimumab\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"portal\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Hepatitis B  Virus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis B virus (HBV)\\u2013infected health-care  providers and students to reduce risk for transmitting HB\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"human immunodeficiency virus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"patitis B virus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBV  infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis B e-antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"patitis B\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"patitis b\"\n",
      "        ]\n",
      "    },\n",
      "    \"HBV-infected after acceptance (see Actions Taken Against HBV-In\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infectious  disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis C virus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"glucose\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"HBV infections\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Chronic  Hepatitis B Infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chronic  hepatitis B\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"lamuvidine\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"bacavir\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"tenofovir\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"Tenofovir\"\n",
      "        ]\n",
      "    },\n",
      "    \"interferon\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"interferon  alpha\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"pegylated interferon\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBV\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"hbV\"\n",
      "        ]\n",
      "    },\n",
      "    \"bloodborne  virus infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBV-In\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis B  e-antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Hepatitis B e Antigen\": {\n",
      "        \"type\": \"genetic\",\n",
      "        \"alias\": [\n",
      "            \"Hepatitis B e antigen\",\n",
      "            \"hepatitis B e antigen\"\n",
      "        ]\n",
      "    },\n",
      "    \"e-antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"bloodborne virus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"wound\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"trauma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"bloodborne infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"B\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"percutaneous injury\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"traumatic injuries\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infectious disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis B immune globulin\": {\n",
      "        \"type\": \"genetic\",\n",
      "        \"alias\": [\n",
      "            \"Hepatitis B immune globulin\"\n",
      "        ]\n",
      "    },\n",
      "    \"HBV-\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis B virus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBV-infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis B surface antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis  e-antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Hepatitis A\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"hepatitis A\"\n",
      "        ]\n",
      "    },\n",
      "    \"infectious hepatitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"patitis D\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"jaundice\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Australia antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis B surface antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Hepatitis B V\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBV infection include  HBsAg, antibody to HBsAg (anti-HBs), immunoglobulin class M  (IgM) antibodies to hepatitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"immunoglobulin class M\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IgM\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis B core antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IgM anti-HBc\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"immunoglobulin class G (IgG) anti-HBc\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IgG anti-HBc\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"fect\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ion\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"acute hepatitis B\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"acute viral hepatitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"fever\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"an\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"orexia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"nausea\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"abdominal discomfort\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatic  tenderness\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatomegaly\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"splenomegaly\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBIG\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"immune deficiencies\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Chronic  infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chronic hepatitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver failure\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Liver failure\"\n",
      "        ]\n",
      "    },\n",
      "    \"infections\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infection with HBV\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver transaminase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"rectal mucosal lesions\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"scratch\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"bra\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"burns\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"insulin\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"aluminum\": {\n",
      "        \"type\": \"chemical\",\n",
      "        \"alias\": [\n",
      "            \"Aluminum\"\n",
      "        ]\n",
      "    },\n",
      "    \"neomycin\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"olymyxin B\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"treptomycin\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"sexually transmitted infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"STI\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"developmentally disabled\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Developmentally disabled\"\n",
      "        ]\n",
      "    },\n",
      "    \"end-stage renal disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis C infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chronic liver disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"fatty liver disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"alcoholic  liver disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"autoimmune hepatitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"aspartate\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"alanine  aminotransferase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"aspartate aminotransferase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"human immunodeficiency virus (HIV) infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"STI/HIV\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"substance use disorder\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HIV-infected\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anti-HBs  antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"injuries\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chronic illness\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anti-HBs antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"lace\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"allergic reaction\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"aphylaxis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ypersensitivity\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anaphylaxis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"allergic reactions\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"multiple sclerosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Guillain-Barr\\u00e9 syndrome\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Guillain-Barr\\u00e9 Syndrome\"\n",
      "        ]\n",
      "    },\n",
      "    \"systemic lupus erythematosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"rheumatoid arthritis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"pain\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"er\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ythema\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"swelling\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"headache\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Headache\"\n",
      "        ]\n",
      "    },\n",
      "    \"chronic fatigue syndrome\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"neurologic disorders\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"leukoencephalitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"optic neuritis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"transverse myelitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"type 1 diabetes\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hair loss\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"cdc\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"patitis B infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis B immune  globulin\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis B  surface antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis C virus [HCV]  infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"alcoholic liver disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"alanine aminotransferase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"In\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"in\"\n",
      "        ]\n",
      "    },\n",
      "    \"fectious Diseases\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver conditions\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"adrq\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ayr\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ayw1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ayw2\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ayw3\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ayw4\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"adw2\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"adw4\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ST\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"dermatologic lesions\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"needle-stick injuries\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"vomiting\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"abdominal  pain\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Malaise\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"skin rash\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"arthralgia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"arthritis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ronic infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"primary  infections\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"human immunodeficiency virus [HIV] infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"cirrhosis of the liver\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"patocellular carcinoma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"immunoglobulin class G\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IgG) anti-HBc\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IgG\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBsAg (49)\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"pa\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Pa\"\n",
      "        ]\n",
      "    },\n",
      "    \"titis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anti-HBc for up to 24 months after birth from passively acquired maternal anti\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"infected with H\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HCV infections\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"alcoholic liver  disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"diabetes acutely infected with\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Hepatitis B Immune Globulins\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"yeast-derived HBsAg\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"thimerosal\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"HBsAg  protein\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Co\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"dip\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"htheria\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"tan\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"patitis A\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"recombinant HBsAg\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"recombinant  HBsAg\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Comvax\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"maternal HBsAg\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"diabetes mellitus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chronic  kidney disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"(125)\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"neurologic, chronic, and autoimmune diseases\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"GBS\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Bell\\u2019s palsy\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"autoimmune thyroid disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hemolytic anemia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"optic  neuritis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"sudden-onset\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"sensorineural hearing loss\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"permanent disability\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"yt\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hema\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"dizziness\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Twinrix\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"developmentally  disabled\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"endemic hepatitis B virus  (HBV) infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis C virus infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"fatty liver  disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"autoimmune  hepatitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HIV infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"partate\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"partate aminotransferase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"maternal anti- HBc\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"anti- HBs\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"maternal anti-HBc\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HCV  infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"STIs\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HIV/AIDS\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chlorhexidine\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"HCP\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBI\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"anti- HBc\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HC\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"rheumatologic or gastroenterologic disorders\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anti-HBs antibodies\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ir- rhosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis C\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Hepatitis C\"\n",
      "        ]\n",
      "    },\n",
      "    \"metabolic disorders\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"nonalcoholic fatty liver disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"NAFLD\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"bolic syndrome\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"cir- rhosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver dysfunction\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"alpha-fetoprotein\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"chronic viral hepatitis B\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"cirrhosis due toHCV\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"cirrho- si\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"whereas\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"des-gamma carboxy\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"des-gamma carboxy pro-thrombin\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"AFP L3\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"lignancies\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"gadolinium\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"gadoxetate disodium\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"gadoxetate\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"laustrophobia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"acute kid-ney injury\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chronic renal failure\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anxiety\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"lignancy\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"li\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"gnancy\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"(25) No\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"liver dis-\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liv- er\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"extrahepatic disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ethanol\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"acetic acid\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"Tu\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"mor\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"denovo tumor\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"acyclic retinoids\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"interferon ther- apy\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"PI-88\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"heparanase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"statin\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"cirrhosisa\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"aceticacid\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"hepatic decompensation\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"L\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"patic dysfunction\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"organ shortage\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"LRT\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"NO\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"RC\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"extrahepatic tumor\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"meta\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"sta\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"rovas\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"cular invasion\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ova\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"invasion\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"extra-hepatic disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"astatic disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"sunitinib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"brivanib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"linifa- nib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"erloti-nib\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"r-afenib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"macrovascular disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"advanced\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"portal vein thrombosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"PVT\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"VT\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"sorafeniband\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"TOG 1112\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"Live\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"r Cancer\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"intrahepatic cholangiocarcinoma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"IHC\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"th\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"rombi\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Primary liver cancer\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"primary liver cancer\"\n",
      "        ]\n",
      "    },\n",
      "    \"hepato- cellular carcinoma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"intrahepatic cholangiocar- cinoma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis B and C virus infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"primary liver tumor\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"intrahe- patic cholangiocarcinoma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver neop\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"lasms/radiother\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver toxicity\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"extrahepaticmetastatic disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"carbon\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"LD\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ILD\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liverfunction\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"RILD\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatomeg- aly\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"alkaline phosphatase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"liver cancers\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"MV\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chronic obstructive pulmonary disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"LC\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"albumin\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"MVI\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"crosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"gastrointestinaland hepatic toxicities\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver lesions\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"vascular tumor\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"thrombi\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"rombus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"IL\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"portal vein tumor\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"vein tumor\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"thrombus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver toxicities\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"portal vein thrombus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver cir-rhosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"irrhotic liver\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liverdecompensation\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver dys-function\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ethiodol\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"lipio- dol\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"primary liver cancers\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"To\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"to\"\n",
      "        ]\n",
      "    },\n",
      "    \"xi\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"city\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"portal or hepatic venous vascular obstruction\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"biliary obstruction\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"\\ufb02uoropyr\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"imidine\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"intra- and extrahepatic tumor\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"improved\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chol-angiocarcinoma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"IHC disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Hepatitis B Vir\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chronic medical\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBV  infections\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infected with HIV\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infectious diseases\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis B infections\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HCV  hepatitis C virus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HIV  human immunodeficiency\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"de\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ox\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"yr\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ic acid\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"anti-HBc  antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis B core antigen anti-HBs  antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBeA\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis B e antigen HBIG  hepatitis B immune globulin HBsAg  hepatitis B surface antigen HBV  hepatitis B virus HBV DNA hepatitis B virus deoxyribonucleic acid HCP   health-care personnel HCV  hepatitis C virus HepB  hepatitis B vaccine HIV  human immunodeficiency virus IDU  injection drug use IG  immune globulin\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"epatitis B\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"psoriasis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"czema\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Percutaneous injuries\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"recombinant HBsAg protein\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Obese\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"obese\"\n",
      "        ]\n",
      "    },\n",
      "    \"ypersensitivity to yeast\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"acute illness\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Anti\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"body Anti-HBs\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis B infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"acute  hepatitis B\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"BIG\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"tender\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ness\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"u\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"rticaria\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"gioedema\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"aphylactic reactions\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"human immune globulin\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"IG\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HIV-positive\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"o\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"owa\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HIV\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBV infected\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"acute hepatitis B  infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis B virus (HBV) infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"viral hepatitis B\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infectious  diseases\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anti-HBc IgM\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBsAg(+)\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"immune disorders\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"metabolic complications\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"yslipidemia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"metabolic syndrome\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"fatty liver\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ir\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"rhot\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBsAg(+\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"variceal hemorrhage\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatic encephalopathy\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBeAg(+)\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HBeAg(-)\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"anti-HBe(+)\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"anti-HBe(-)\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis D virus coinfection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBsAg(-)\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"serum alpha-fetoprotein (AFP)2\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"anti-HBc IgG\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ALL\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBsAg(-) women should:  < Receive birth dose HB\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"chronic hepatitis B infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepa\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"titis B virus (HBV) infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"liver damage\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"e anti\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Hepatitis D\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infected with the\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis D virus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HDV infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBV disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis b positive\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ronic Hepatitis B\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ronic  Hepatitis B\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis  B\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis b/hiV co-infections\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"kidney disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatitis B virus (HBV)-speci\\ufb01 c antigens\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Hepatitis B surface  antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"Hepatitis B surface  antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis B core  antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"infection with  hepatitis B virus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infection with hepatitis B virus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"IgM antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis B  core antigen\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"hepatitis C virus (HCV) infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HCV antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"m\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"usculoskeletal\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"traumatic brain injury\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"schizophrenia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"substance abuse\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"elevated liver enzymes\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"alanine aminotransaminase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"elevated liver function\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"infection with HCV\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Hepatitis C antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"NS5b sequences\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"E1\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HVR\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"E1-HVR\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"anti-HCV antibody\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"foodborne disease\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Foodborne Disease\"\n",
      "        ]\n",
      "    },\n",
      "    \"foodborne outbreak\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"foodborne diseases\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Foodborne diseases\"\n",
      "        ]\n",
      "    },\n",
      "    \"FTE\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"foodborne  disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"enteric illness\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"Listeria\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"food-borne disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"pi\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"llomavirus Vaccine  in Males \\u2014 Advisory Committee on Immunization Practices (ACIP), 2011  On October 25, 2011, the Advisory Committee on Immunization  Practices (ACIP) recommended routine use of quadrivalent human p\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ap\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"illoma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anal intraepithelial neoplasia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"AI\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anal cancer\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"genital warts\": {\n",
      "        \"type\": \"disease\",\n",
      "        \"alias\": [\n",
      "            \"Genital warts\"\n",
      "        ]\n",
      "    },\n",
      "    \"anal, penile, and oropharyngeal cancers\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"oropharyngeal and anal cancers\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"oropharyngeal cancers\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anal cancers\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"geni\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"tal warts\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"condylomata\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"respiratory papillomatosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"genital lesions\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"penile/perineal/ perianal intraepithelial neoplasia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"warts\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"oropharyngeal cancer\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"cervical intraepithelial neoplasia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"CIN\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"adenocarcinoma  in situ\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"AIS\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"vulvar intraepithelial neoplasia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"VIN\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"vaginal intraepithelial neoplasia\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"VaIN\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ve\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"nous thromboembolism\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"appendicitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"seizures\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"yncope\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"aph\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ylaxis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"venous thromboembolism\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"AIN\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"g\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"enital warts\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"anal, oropharyngeal, and penile cancer\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"CIN1/2\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"CIN2/3\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"VIN2\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"VaIN2\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"oropharyngeal or penile cancer\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"diabe- tes\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"ulmina\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBV infec- tions\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBV\\u2013infected\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"diagnosed diabetes\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"nonalcoholic steatohepatitis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"nonalcoholic liver disease\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"fection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepa- titis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"vac-cine\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"Hepatitis\\tB\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"frailty\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"geriatric syndrome\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"asthma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"carpal tunnel syndrome\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hepatocel- lular carcinoma\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"cology\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chronic\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"NASH\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"chronic hepatitis B virus (HBV) infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"stat\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"alpha- fetoprotein\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"FP\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"ci\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"rr\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"hosis\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBVin\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"har\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HBVinfection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HCCs\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"cirrhotic\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"HCC 2577\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"chronichepatitis B infection\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"glutamine\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"Glypican 3\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"glutamine synthase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"HSP70\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"\\ufb02\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"am\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"mation\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"aspartate aminotrans- ferase\": {\n",
      "        \"type\": \"genetic\"\n",
      "    },\n",
      "    \"portalhypertension\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"patitis C virus\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"v\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"ivantinib\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"sorafenib37\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"study\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"BCLC\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"breast\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"breast cancer\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"colorectalcancer\": {\n",
      "        \"type\": \"disease\"\n",
      "    },\n",
      "    \"management\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"rot\": {\n",
      "        \"type\": \"chemical\"\n",
      "    },\n",
      "    \"lungcancer\": {\n",
      "        \"type\": \"disease\"\n",
      "    }\n",
      "}\n"
     ]
    }
   ],
   "source": [
    "print(json.dumps(data,indent=4))\n",
    "\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "with open(\"./ner_output/test_w.json\",\"w\") as file:\n",
    "    json.dump(data,file)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "for key in data:\n",
    "    print(key)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 47,
   "metadata": {},
   "outputs": [],
   "source": [
    "def merg_or_append(entities, name, entity):\n",
    "    has_same = False\n",
    "\n",
    "    for key in entities:\n",
    "        if(key.lower() == name.lower()):\n",
    "            has_same = True\n",
    "            entities[key]['alias'] = name\n",
    "            break\n",
    "    \n",
    "    if(not has_same):\n",
    "        entities[name] = entity"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 48,
   "metadata": {},
   "outputs": [],
   "source": [
    "# write json(complete)\n",
    "\n",
    "names = [\"A1\",\"B2\",\"C1\",\"A2\",\"a1\",\"c1\"]\n",
    "type = \"disease\"\n",
    "empty_json = {}\n",
    "entities = json.loads(json.dumps(empty_json))\n",
    "\n",
    "for name in names:\n",
    "    entity = {\n",
    "        \"type\":type\n",
    "    }\n",
    "    merg_or_append(entities,name,entity)\n",
    "\n",
    "# print(entities)\n",
    "\n",
    "with open(\"./ner_output/test_w.json\",\"w\") as file:\n",
    "    json.dump(entities,file)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [],
   "source": [
    "# write json(test)\n",
    "\n",
    "entity = {\n",
    "    \"name\":\"A1\",\n",
    "    \"typy\":\"disease\"\n",
    "}\n",
    "with open(\"./ner_output/test_w.json\",\"w\") as file:\n",
    "    json.dump(entity,file)"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.10.9"
  },
  "orig_nbformat": 4
 },
 "nbformat": 4,
 "nbformat_minor": 2
}