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Template not properly suppressed? #4

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J-Moravec opened this issue May 8, 2019 · 0 comments
Open

Template not properly suppressed? #4

J-Moravec opened this issue May 8, 2019 · 0 comments

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@J-Moravec
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  1. Fresh install of BEAST package.
  2. added NS through package manager and restarted BEAUTI
  3. NS is present as template, but when selected, it removes all the BEAUTI tabs.

It seems that the commented out parts of the template are still evaluated by BEAUTI, this might be problematic by itself (deleting commented text makes the MergeWith errors disappear).

Given that currently the template doesn't seem to do anything, shouldn't it be simply removed?

Loading template /home/jmoravec/.beast/2.5/NS/templates/NS.xml
Investigating 
Investigating /home/jmoravec/.beast/2.5/BEASTLabs
Investigating /home/jmoravec/.beast/2.5/MODEL_SELECTION
Investigating /home/jmoravec/.beast/2.5/BEAST
Processing /home/jmoravec/.beast/2.5/BEAST/templates/SubstModels.xml
Cannot find merge point named substModelTemplates from SubstModels.xml in template. MergeWith ignored.
Processing /home/jmoravec/.beast/2.5/BEAST/templates/ClockModels.xml
Cannot find merge point named clockModelTemplates from ClockModels.xml in template. MergeWith ignored.
Processing /home/jmoravec/.beast/2.5/BEAST/templates/Standard.xml
Processing /home/jmoravec/.beast/2.5/BEAST/templates/StarBeast.xml
Processing /home/jmoravec/.beast/2.5/BEAST/templates/ParametricDistributions.xml
Cannot find merge point named parametricDistributions from ParametricDistributions.xml in template. MergeWith ignored.
Processing /home/jmoravec/.beast/2.5/BEAST/templates/TreePriors.xml
Cannot find merge point named misc from TreePriors.xml in template. MergeWith ignored.
Cannot find merge point named treePriorTemplates from TreePriors.xml in template. MergeWith ignored.
Investigating /home/jmoravec/.beast/2.5/NS
Investigating .
Validation message: At least one input of name 'xx' must be specified.
class beast.core.MCMC != class beast.core.Runnable
class beast.core.util.CompoundDistribution != class beast.core.Distribution
BeastMain found in /home/jmoravec/.beast/2.5/BEAST/lib/beast.jar
BeastMain found in /home/jmoravec/.beast/2.5/BEAST/lib/beast.jar
BeastMain found in /home/jmoravec/.beast/2.5/BEAST/lib/beast.jar
BeastMain found in /home/jmoravec/.beast/2.5/BEAST/lib/beast.jar
BeastMain found in /home/jmoravec/.beast/2.5/BEAST/lib/beast.jar
BeastMain found in /home/jmoravec/.beast/2.5/BEAST/lib/beast.jar
BeastMain found in /home/jmoravec/.beast/2.5/BEAST/lib/beast.jar
BeastMain found in /home/jmoravec/.beast/2.5/BEAST/lib/beast.jar
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