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The "Calc mutation rates" button might calculate U and V incorrectly.
With the following alignment
NEXUS
begin data;
dimensions ntax=2 nchar=2;
format datatype=integerdata symbols="01" missing=- interleave=no;
matrix
spc1 11
spc2 01
;
end;
the resulting values are u=0.66666 and v=2.0, however u (according to help tip "Instantaneous rate of mutating from the 0 allele to the 1 allele") should be higher.
Results are also different when missing data is added. With the alignment
NEXUS
begin data;
dimensions ntax=2 nchar=4;
format datatype=integerdata symbols="01" missing=- interleave=no;
matrix
spc1 11--
spc2 01--
;
end;
the values are u=1.3333 and v=0.8.
The text was updated successfully, but these errors were encountered:
The "Calc mutation rates" button might calculate U and V incorrectly.
With the following alignment
NEXUS
begin data;
dimensions ntax=2 nchar=2;
format datatype=integerdata symbols="01" missing=- interleave=no;
matrix
spc1 11
spc2 01
;
end;
the resulting values are u=0.66666 and v=2.0, however u (according to help tip "Instantaneous rate of mutating from the 0 allele to the 1 allele") should be higher.
Results are also different when missing data is added. With the alignment
NEXUS
begin data;
dimensions ntax=2 nchar=4;
format datatype=integerdata symbols="01" missing=- interleave=no;
matrix
spc1 11--
spc2 01--
;
end;
the values are u=1.3333 and v=0.8.
The text was updated successfully, but these errors were encountered: